A
team of theoretical physicists at the University of Manitoba has
developed a new model for how an electrical charge travels through DNA.
Their research was published earlier this month in Physical Review
Letters, the journal of the American Physical Society.
The team’s leader is physicist Tapash Chakraborty, Canada Research
Chair in nanoscale physics. He said scientists have been wrestling with
the problem of charge migration in DNA since the double helix was
discovered more than half a century ago.
“DNA is a fascinating, very intelligent molecule,” he said. “It can
self assemble, and with the recent developments in nanotechnology,
there is a great deal of interest in its potential use as a molecular
wire.”
Researchers around the world have conducted a wide range of studies
on the conductive properties of DNA. Some have found it to be highly
metallic, while others found the molecule behaved like a semi-conductor.
“The results depend on whether the DNA is wet or dry, or whether
it’s a single strand or a rope, so it can be very complicated,”
Chakraborty said.
Previous research has shown that of the four bases that make up DNA
– adenine, thymine, guanine and cytosine – guanine has the lowest
ionization potential, meaning that it’s easier to knock an electron off
guanine. When this is done, a positively-charged guanine “hole” will
move along the DNA strand until it reaches a “trap” made up of two or
three non-charged guanines in a row. The other DNA bases act as
barriers to this movement, but the hole can pass through them thanks to
a quantum mechanical process called “tunneling.”
Earlier models suggested that when the hole encounters several
barriers, it stops tunneling through them and begins to hop along the
DNA strand. Unfortunately, this theory didn’t explain some of the
experimental results. Chakraborty’s team suggested that since DNA is a
double helix, the charge would more likely move over to the other
strand and keep going.
“We said the charge could either move along the same strand or it
can cross over to the other one, which we think is a more natural
model,” Chakraborty said. “We call it a ‘multi-channel tunneling’
model, in which the charge can tunnel all the way through to the trap,
taking the path it finds easiest, and that could mean crossing over to
the other strand.”
Knowing whether DNA will conduct a charge is of more than just
academic interest. Understanding exactly how a charge travels through
DNA is very important to rapidly growing fields like nanotechnology,
and it also has significant implications for medical research,
particularly in understanding the process of DNA damage.
“It is well known that aging, many types of human cancer, and
several degenerative neurological diseases are caused by mutations that
happen when this DNA base, guanine, is oxidized,” Chakraborty said.
“It’s very important to understand how this oxidative damage happens,
and what physicists and chemists are doing, in the process of
understanding how charges propagate, is describing the electronic
properties of these mutational hotspots.”